In Phillipines there are Expressways that are owned by different companies.
They are likely non competing so depending on your destination, you're either going to use either one of them or both.

So It is natural to have them in Toll and HOV Passes (Autosweep RFID and Easytrip RFID), so the route functions correctly for your desired destination.

But there are certain conditions that they are now competing.
Specifically with NLEX Connector Road vs SKY WAY Stage 3

Say you begin your travel at Santa Mesa Manila for example, if your destination for example is somewhere North like Pampanga or Baguio.

the App will likely recommend the Skyway Stage 3 to go to NLEX and then NLEX to your desired destination.
with other route options like service roads.

But in reality you have 2 options now to go to NLEX, you can now use the newly created NLEX Connector Road or Sky Way Stage 3.

Right now my solution is to remove one of the RFIDs (Autosweep or Easytrip) to get my desired expressway choice.

this also happens on routes that does not need to go in an expressway but still recommended to.
For example your destination is NLEX, and you want to go service road then NLEX
right now the option if select service road all the way or select expressways all the way

Would be pretty nice to have an option which one to select, kind of like a prompt that asks you which one you preferred on taking.

Sometimes The fastest route is not always the solution, Sometimes people want to save money by mixing and matching.